rs579932661 SNP Detail

Summary

• ID
  rs579932661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:4271326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GTCATAACAG GAACTAACTA
  R
  TACACATGTT TTGGCCATGG TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	JF1/MsJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SM/J
ss921127288	MGP_WTSI_12_4221326	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	JF1/MsJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	SM/J
rs579932661					SNP	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921127288	MGP_WTSI_12_4221326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4271326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpo	centromere protein O			Intron
				Noncoding-Transcript-Variant
Gm48210	predicted gene, 48210			776 bp upstream