rs579950856 SNP Detail

Summary

• ID
  rs579950856
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACAAACAT GAAGACCAGA
  G
  AACTTTATGG GAGGATTGTT CTCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	RF/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss917236537	MGP_WTSI_5_15027140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	RF/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs579950856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917236537	MGP_WTSI_5_15027140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077154 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	148 bp proximal
Gm17019	predicted gene 17019	1810 bp downstream
Gm71745	predicted gene, 71745	within coordinates
Rr121520	regulatory region 121520	1740 bp distal
Rr121523	regulatory region 121523	930 bp proximal
Rr128307	regulatory region 128307	within coordinates