rs579965390 SNP Detail

Summary

• ID
  rs579965390
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72886511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GGGAAGGGAA GGGAAGGGAA
  S
  GGAAGGGAAG GGAAGGGAAG GGAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	QSi5/Ianm	SWR/J	ZALENDE/EiJ
ss914733898	MGP_WTSI_1_72847352	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	QSi5/Ianm	SWR/J	ZALENDE/EiJ
rs579965390					SNP	C	C	G	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914733898	MGP_WTSI_1_72847352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72886511 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	1727 bp upstream
Tssr7322	transcription start site region 7322	1756 bp upstream
Tssr7323	transcription start site region 7323	1799 bp upstream
Tssr7324	transcription start site region 7324	1848 bp upstream
Tssr7325	transcription start site region 7325	1863 bp upstream
Tssr7326	transcription start site region 7326	1893 bp upstream
Tssr7327	transcription start site region 7327	1922 bp upstream
Tssr12178	transcription start site region 12178	1763 bp downstream
Tssr12179	transcription start site region 12179	1806 bp downstream
Tssr12180	transcription start site region 12180	1870 bp downstream
Tssr12181	transcription start site region 12181	1891 bp downstream
Tssr12182	transcription start site region 12182	1934 bp downstream
Tssr12183	transcription start site region 12183	1955 bp downstream