rs579984920 SNP Detail

Summary

• ID
  rs579984920
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG GTTGTGACTA CATCAGTGGT
  T
  GTGATTTCAT CAGTGGTTGT GACTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
ss917727731	MGP_WTSI_5_137150461	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
rs579984920					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727731	MGP_WTSI_5_137150461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179309 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1193 bp upstream
Tssr1678	transcription start site region 1678	23 bp downstream
Tssr1679	transcription start site region 1679	966 bp downstream
Tssr1680	transcription start site region 1680	986 bp upstream
Tssr1681	transcription start site region 1681	1009 bp downstream
Tssr1682	transcription start site region 1682	1026 bp downstream
Tssr1683	transcription start site region 1683	1115 bp downstream
Tssr1684	transcription start site region 1684	1131 bp downstream
Tssr1685	transcription start site region 1685	1145 bp upstream
Tssr1686	transcription start site region 1686	1172 bp downstream
Tssr1687	transcription start site region 1687	1223 bp downstream
Tssr1688	transcription start site region 1688	1247 bp downstream
Tssr1689	transcription start site region 1689	1266 bp upstream
Tssr1690	transcription start site region 1690	1433 bp upstream
Tssr1691	transcription start site region 1691	1437 bp downstream
Tssr1692	transcription start site region 1692	1601 bp downstream
Tssr1693	transcription start site region 1693	1743 bp upstream
Tssr1694	transcription start site region 1694	1781 bp downstream
Tssr1695	transcription start site region 1695	1900 bp upstream
Tssr1696	transcription start site region 1696	1957 bp upstream
Tssr49309	transcription start site region 49309	660 bp downstream
Tssr49310	transcription start site region 49310	318 bp downstream
Tssr49311	transcription start site region 49311	294 bp downstream
Tssr49312	transcription start site region 49312	71 bp upstream
Tssr49313	transcription start site region 49313	319 bp upstream
Tssr49314	transcription start site region 49314	590 bp upstream
Tssr49315	transcription start site region 49315	606 bp upstream
Tssr49316	transcription start site region 49316	1522 bp upstream
Tssr49317	transcription start site region 49317	1792 bp upstream
Tssr49318	transcription start site region 49318	1974 bp upstream
Tssr53919	transcription start site region 53919	813 bp upstream
Tssr53920	transcription start site region 53920	778 bp upstream
Tssr53921	transcription start site region 53921	620 bp upstream
Tssr53922	transcription start site region 53922	604 bp upstream
Tssr53923	transcription start site region 53923	562 bp upstream
Tssr53924	transcription start site region 53924	543 bp upstream
Tssr53925	transcription start site region 53925	511 bp upstream
Tssr53926	transcription start site region 53926	477 bp upstream
Tssr53927	transcription start site region 53927	328 bp upstream
Tssr53928	transcription start site region 53928	315 bp upstream
Tssr53929	transcription start site region 53929	275 bp upstream
Tssr53930	transcription start site region 53930	204 bp upstream
Tssr53931	transcription start site region 53931	186 bp upstream
Tssr53932	transcription start site region 53932	168 bp upstream
Tssr53933	transcription start site region 53933	129 bp upstream
Tssr53934	transcription start site region 53934	96 bp upstream
Tssr53935	transcription start site region 53935	43 bp upstream
Tssr53936	transcription start site region 53936	20 bp upstream
Tssr53937	transcription start site region 53937	55 bp downstream
Tssr53938	transcription start site region 53938	91 bp downstream
Tssr53939	transcription start site region 53939	145 bp downstream
Tssr53940	transcription start site region 53940	321 bp downstream
Tssr53941	transcription start site region 53941	361 bp downstream
Tssr53942	transcription start site region 53942	420 bp downstream
Tssr53943	transcription start site region 53943	585 bp downstream
Tssr53944	transcription start site region 53944	634 bp downstream
Tssr53945	transcription start site region 53945	644 bp downstream
Tssr53946	transcription start site region 53946	665 bp downstream
Tssr53947	transcription start site region 53947	773 bp downstream
Tssr53948	transcription start site region 53948	1669 bp downstream
Tssr53949	transcription start site region 53949	1710 bp downstream
Tssr53950	transcription start site region 53950	1832 bp downstream
Tssr53951	transcription start site region 53951	1944 bp downstream
Tssr53952	transcription start site region 53952	1958 bp downstream