rs579986932 SNP Detail

Summary

• ID
  rs579986932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:90449579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT AGATAGATAG ATAGATAGAT
  R
  GATGGATGGA TGGATGGATG GATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss920532771	MGP_WTSI_10_90613717	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs579986932					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920532771	MGP_WTSI_10_90613717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90449579 () rs orientation: forward

Symbol	Name	Function Class
Anks1b	ankyrin repeat and sterile alpha motif domain containing 1B	Intron
Gm66575	predicted gene, 66575	1701 bp upstream
Rr436918	regulatory region 436918	1581 bp proximal