rs579998527 SNP Detail

Summary

• ID
  rs579998527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:49674395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC ATCATCTAGA TCAATGGGGG
  K
  GGGGGGGAAA GGGAACTTTT GGGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
ss923175828	MGP_WTSI_16_49854032	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
rs579998527					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923175828	MGP_WTSI_16_49854032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49674395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi8307	CpG island 8307			1082 bp proximal
Gm4633	predicted gene 4633			Intron
				Noncoding-Transcript-Variant
Gm56621	predicted gene, 56621			466 bp upstream
Rr516740	regulatory region 516740			583 bp distal
Rr516741	regulatory region 516741			within coordinates
Rr516742	regulatory region 516742			844 bp proximal
Rr516743	regulatory region 516743			1345 bp proximal
Rr516744	regulatory region 516744			1459 bp proximal
Tssr4899	transcription start site region 4899			1074 bp upstream
Tssr4900	transcription start site region 4900			1228 bp upstream
Tssr4901	transcription start site region 4901			1338 bp upstream
Tssr4902	transcription start site region 4902			1453 bp upstream
Tssr4903	transcription start site region 4903			1735 bp upstream
Tssr138723	transcription start site region 138723			855 bp downstream
Tssr138724	transcription start site region 138724			315 bp upstream
Tssr138725	transcription start site region 138725			505 bp upstream
Tssr138726	transcription start site region 138726			1057 bp upstream
Tssr138727	transcription start site region 138727			1087 bp upstream
Tssr138728	transcription start site region 138728			1317 bp upstream
Tssr138729	transcription start site region 138729			1592 bp upstream
Tssr138730	transcription start site region 138730			1713 bp upstream
Tssr141348	transcription start site region 141348			1265 bp downstream
Tssr141349	transcription start site region 141349			1485 bp downstream
Tssr141350	transcription start site region 141350			1800 bp downstream