rs580010141 SNP Detail

Summary

• ID
  rs580010141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AAGGAAGGAA GGGAGGAAGG
  R
  AGGGAGGGAG GGAGAAAGGG AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	LP/J	NOD/ShiLtJ	NZO/HlLtJ
ss923116074	MGP_WTSI_16_32486953	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	LP/J	NOD/ShiLtJ	NZO/HlLtJ
rs580010141					SNP	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923116074	MGP_WTSI_16_32486953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305771 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1106 bp upstream
Rr514710	regulatory region 514710	1400 bp distal
Rr514711	regulatory region 514711	179 bp proximal
Rr514712	regulatory region 514712	916 bp proximal
Rr514713	regulatory region 514713	1117 bp proximal
Rr514714	regulatory region 514714	1818 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	643 bp downstream
Tssr4847	transcription start site region 4847	662 bp downstream
Tssr137989	transcription start site region 137989	1140 bp upstream
Tssr140806	transcription start site region 140806	778 bp upstream
Tssr140807	transcription start site region 140807	199 bp downstream
Tssr140808	transcription start site region 140808	215 bp downstream
Tssr140809	transcription start site region 140809	242 bp downstream
Tssr140810	transcription start site region 140810	272 bp downstream
Tssr140811	transcription start site region 140811	690 bp downstream
Tssr140812	transcription start site region 140812	714 bp downstream
Tssr140813	transcription start site region 140813	856 bp downstream
Tssr140814	transcription start site region 140814	920 bp downstream
Tssr140815	transcription start site region 140815	944 bp downstream