rs580040824 SNP Detail

Summary

• ID
  rs580040824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32918917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCCTTTT CTCTCTCTCT
  Y
  TCTTTCTTTC TTTCTTTCTT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	FVB/NJ	NZB/BlNJ	NZO/HlLtJ	SJL/J	SWR/J
ss921769236	MGP_WTSI_13_32734934	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	FVB/NJ	NZB/BlNJ	NZO/HlLtJ	SJL/J	SWR/J
rs580040824					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921769236	MGP_WTSI_13_32734934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32918917 () rs orientation: forward

Symbol	Name	Function Class
Mylk4	myosin light chain kinase family, member 4	within coordinates
Rr278925	regulatory region 278925	142 bp distal