rs580068472 SNP Detail

Summary

• ID
  rs580068472
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:6738006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA CAACCCCCCC CAACACCACA
  C
  ACACACACAC ACACACACAC ACACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C57BL/6J	CZECHII/EiJ	PWK/PhJ	QSi5/Ianm	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918500244	MGP_WTSI_7_6735007	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C57BL/6J	CZECHII/EiJ	PWK/PhJ	QSi5/Ianm	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580068472					SNP	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918500244	MGP_WTSI_7_6735007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:6738006 () rs orientation: forward

Symbol	Name	Function Class
Tssr64457	transcription start site region 64457	869 bp downstream
Usp29	ubiquitin specific peptidase 29	within coordinates