rs580083003 SNP Detail

Summary

• ID
  rs580083003
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71440209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GGAAGGGAAG GGAAGGGAAG
  G
  GAAGGGAAGG GAAGGGAAGG GAAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SWR/J
ss925269978	MGP_WTSI_2_71609865_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SWR/J
rs580083003					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925269978	MGP_WTSI_2_71609865_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71440209 () rs orientation: forward

Symbol	Name	Function Class
Gm74658	predicted gene, 74658	within coordinates
Rr558783	regulatory region 558783	804 bp distal
Rr558784	regulatory region 558784	930 bp proximal