rs580083798 SNP Detail

Summary

• ID
  rs580083798
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103913715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CTGCTGCTGC TTCTGCTGCT
  K
  CTGCTGCTGC TGCTTCTGCT TCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RF/J	SM/J	SWR/J
ss915604527	MGP_WTSI_2_104083370	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	T	T	T	T	T	T	T	G	T	G	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RF/J	SM/J	SWR/J
rs580083798					SNP	G	G	G	T	G	T	T	T	T	T	T	T	G	T	G	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915604527	MGP_WTSI_2_104083370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103913715 () rs orientation: forward

Symbol	Name	Function Class
Cd59b	CD59b antigen	Intron
Rr562021	regulatory region 562021	1403 bp distal
Rr562022	regulatory region 562022	55 bp distal
Rr562023	regulatory region 562023	652 bp proximal