rs580095245 SNP Detail

Summary

• ID
  rs580095245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26318037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC ACCATGCCAA TGTTGTTCTG
  Y
  TGCCCACTGG TTGCCATCTC CACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/2J	FVB/NJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss923491336	MGP_WTSI_17_26099063	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	C	C	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/2J	FVB/NJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs580095245					SNP	T	C	T	C	C	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923491336	MGP_WTSI_17_26099063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26318037 () rs orientation: forward

Symbol	Name	Function Class
Gm8186	predicted gene 8186	within coordinates
Tssr146918	transcription start site region 146918	194 bp downstream