rs580100374 SNP Detail

Summary

• ID
  rs580100374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60228515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT CCAAGTCTTC CCAGAAATCC
  R
  AGTCTTCCCA GAAGTCCAAG TCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924556987	MGP_WTSI_X_61184909	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580100374					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924556987	MGP_WTSI_X_61184909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60228515 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	within coordinates
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	887 bp downstream
Tssr161077	transcription start site region 161077	1650 bp downstream
Tssr161078	transcription start site region 161078	1626 bp downstream
Tssr161079	transcription start site region 161079	1594 bp downstream
Tssr161080	transcription start site region 161080	1575 bp downstream
Tssr161081	transcription start site region 161081	1443 bp downstream
Tssr161082	transcription start site region 161082	1423 bp downstream
Tssr161083	transcription start site region 161083	1346 bp downstream
Tssr161084	transcription start site region 161084	1109 bp downstream
Tssr161085	transcription start site region 161085	1092 bp downstream
Tssr161086	transcription start site region 161086	1033 bp downstream
Tssr161087	transcription start site region 161087	1000 bp downstream
Tssr161088	transcription start site region 161088	976 bp downstream
Tssr161089	transcription start site region 161089	959 bp downstream
Tssr161090	transcription start site region 161090	499 bp upstream
Tssr161091	transcription start site region 161091	608 bp upstream
Tssr161092	transcription start site region 161092	722 bp upstream
Tssr161093	transcription start site region 161093	767 bp upstream
Tssr161094	transcription start site region 161094	791 bp upstream
Tssr161095	transcription start site region 161095	832 bp upstream
Tssr161096	transcription start site region 161096	871 bp upstream
Tssr161097	transcription start site region 161097	939 bp upstream
Tssr161098	transcription start site region 161098	969 bp upstream
Tssr161099	transcription start site region 161099	1085 bp upstream
Tssr161100	transcription start site region 161100	1128 bp upstream
Tssr161101	transcription start site region 161101	1149 bp upstream
Tssr161102	transcription start site region 161102	1221 bp upstream