rs580104678 SNP Detail

Summary

• ID
  rs580104678
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TTGTGGTGGA TGGGGAACTG
  G
  ATCTTTGCTG GTACTCCTGC CGTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
ss917727854	MGP_WTSI_5_137153156	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
rs580104678					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727854	MGP_WTSI_5_137153156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190095 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	455 bp upstream
Tssr49319	transcription start site region 49319	291 bp downstream
Tssr49320	transcription start site region 49320	279 bp downstream
Tssr53954	transcription start site region 53954	361 bp upstream
Tssr53955	transcription start site region 53955	345 bp upstream
Tssr53956	transcription start site region 53956	326 bp upstream
Tssr53957	transcription start site region 53957	309 bp upstream
Tssr53958	transcription start site region 53958	254 bp upstream
Tssr53959	transcription start site region 53959	241 bp upstream
Tssr53960	transcription start site region 53960	175 bp upstream
Tssr53961	transcription start site region 53961	76 bp upstream
Tssr53962	transcription start site region 53962	58 bp upstream
Tssr53963	transcription start site region 53963	19 bp upstream
Tssr53964	transcription start site region 53964	11 bp downstream
Tssr53965	transcription start site region 53965	37 bp downstream
Tssr53966	transcription start site region 53966	905 bp downstream
Tssr53967	transcription start site region 53967	931 bp downstream