rs580110986 SNP Detail

Summary

• ID
  rs580110986
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTA CATCAGTGGT TGTGATTTCA
  T
  CAGTGGTTGT GACTTCAGCA CTGGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
ss917727734	MGP_WTSI_5_137150471	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
rs580110986					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727734	MGP_WTSI_5_137150471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179319 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1203 bp upstream
Tssr1678	transcription start site region 1678	13 bp downstream
Tssr1679	transcription start site region 1679	956 bp downstream
Tssr1680	transcription start site region 1680	976 bp upstream
Tssr1681	transcription start site region 1681	999 bp downstream
Tssr1682	transcription start site region 1682	1016 bp downstream
Tssr1683	transcription start site region 1683	1105 bp downstream
Tssr1684	transcription start site region 1684	1121 bp downstream
Tssr1685	transcription start site region 1685	1135 bp upstream
Tssr1686	transcription start site region 1686	1162 bp downstream
Tssr1687	transcription start site region 1687	1213 bp downstream
Tssr1688	transcription start site region 1688	1237 bp downstream
Tssr1689	transcription start site region 1689	1256 bp upstream
Tssr1690	transcription start site region 1690	1423 bp upstream
Tssr1691	transcription start site region 1691	1427 bp downstream
Tssr1692	transcription start site region 1692	1591 bp downstream
Tssr1693	transcription start site region 1693	1733 bp upstream
Tssr1694	transcription start site region 1694	1771 bp downstream
Tssr1695	transcription start site region 1695	1890 bp upstream
Tssr1696	transcription start site region 1696	1947 bp upstream
Tssr49309	transcription start site region 49309	670 bp downstream
Tssr49310	transcription start site region 49310	328 bp downstream
Tssr49311	transcription start site region 49311	304 bp downstream
Tssr49312	transcription start site region 49312	61 bp upstream
Tssr49313	transcription start site region 49313	309 bp upstream
Tssr49314	transcription start site region 49314	580 bp upstream
Tssr49315	transcription start site region 49315	596 bp upstream
Tssr49316	transcription start site region 49316	1512 bp upstream
Tssr49317	transcription start site region 49317	1782 bp upstream
Tssr49318	transcription start site region 49318	1964 bp upstream
Tssr53919	transcription start site region 53919	823 bp upstream
Tssr53920	transcription start site region 53920	788 bp upstream
Tssr53921	transcription start site region 53921	630 bp upstream
Tssr53922	transcription start site region 53922	614 bp upstream
Tssr53923	transcription start site region 53923	572 bp upstream
Tssr53924	transcription start site region 53924	553 bp upstream
Tssr53925	transcription start site region 53925	521 bp upstream
Tssr53926	transcription start site region 53926	487 bp upstream
Tssr53927	transcription start site region 53927	338 bp upstream
Tssr53928	transcription start site region 53928	325 bp upstream
Tssr53929	transcription start site region 53929	285 bp upstream
Tssr53930	transcription start site region 53930	214 bp upstream
Tssr53931	transcription start site region 53931	196 bp upstream
Tssr53932	transcription start site region 53932	178 bp upstream
Tssr53933	transcription start site region 53933	139 bp upstream
Tssr53934	transcription start site region 53934	106 bp upstream
Tssr53935	transcription start site region 53935	53 bp upstream
Tssr53936	transcription start site region 53936	30 bp upstream
Tssr53937	transcription start site region 53937	45 bp downstream
Tssr53938	transcription start site region 53938	81 bp downstream
Tssr53939	transcription start site region 53939	135 bp downstream
Tssr53940	transcription start site region 53940	311 bp downstream
Tssr53941	transcription start site region 53941	351 bp downstream
Tssr53942	transcription start site region 53942	410 bp downstream
Tssr53943	transcription start site region 53943	575 bp downstream
Tssr53944	transcription start site region 53944	624 bp downstream
Tssr53945	transcription start site region 53945	634 bp downstream
Tssr53946	transcription start site region 53946	655 bp downstream
Tssr53947	transcription start site region 53947	763 bp downstream
Tssr53948	transcription start site region 53948	1659 bp downstream
Tssr53949	transcription start site region 53949	1700 bp downstream
Tssr53950	transcription start site region 53950	1822 bp downstream
Tssr53951	transcription start site region 53951	1934 bp downstream
Tssr53952	transcription start site region 53952	1948 bp downstream