rs580120298 SNP Detail

Summary

• ID
  rs580120298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124151488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCTTCCTTCC TTCCTTCCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	I/LnJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	ST/bJ	SWR/J
ss919582248	MGP_WTSI_8_123424749	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	I/LnJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	ST/bJ	SWR/J
rs580120298					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919582248	MGP_WTSI_8_123424749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124151488 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	1124 bp downstream
Rr175034	regulatory region 175034	1688 bp distal
Rr183291	regulatory region 183291	234 bp distal
Tssr83353	transcription start site region 83353	1988 bp downstream