rs580136863 SNP Detail

Summary

• ID
  rs580136863
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94537079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC CGCGCCGTCC CCGGGGCCCC
  S
  GGCGCGCGGC CCTGCTGACG TCAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss919469327	MGP_WTSI_8_93810451	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs580136863					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919469327	MGP_WTSI_8_93810451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94537079 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1243 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Gnao1	guanine nucleotide binding protein, alpha O	134 bp upstream
Rr667832	regulatory region 667832	172 bp distal
Rr667833	regulatory region 667833	within coordinates
Rr667834	regulatory region 667834	463 bp proximal
Rr667835	regulatory region 667835	873 bp proximal
Tssr78791	transcription start site region 78791	14 bp upstream
Tssr78792	transcription start site region 78792	101 bp upstream
Tssr78793	transcription start site region 78793	121 bp upstream
Tssr78794	transcription start site region 78794	320 bp upstream
Tssr78795	transcription start site region 78795	339 bp upstream
Tssr78796	transcription start site region 78796	356 bp upstream
Tssr78797	transcription start site region 78797	368 bp upstream
Tssr78798	transcription start site region 78798	381 bp upstream
Tssr78799	transcription start site region 78799	437 bp upstream
Tssr78800	transcription start site region 78800	479 bp upstream
Tssr78801	transcription start site region 78801	539 bp upstream
Tssr78802	transcription start site region 78802	632 bp upstream
Tssr78803	transcription start site region 78803	832 bp upstream
Tssr78804	transcription start site region 78804	871 bp upstream
Tssr82468	transcription start site region 82468	190 bp upstream