rs580145878 SNP Detail

Summary

• ID
  rs580145878
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44396155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC CAGGCGTGGA GGTGAGGGAG
  G
  GAGGGAGGGA GGGAGGGAGG AAGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924296329	MGP_WTSI_19_44407716	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580145878					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924296329	MGP_WTSI_19_44407716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44396155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	65 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	within coordinates
Gm59215	predicted gene, 59215	567 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	7 bp upstream
Tssr5525	transcription start site region 5525	241 bp upstream
Tssr5526	transcription start site region 5526	208 bp upstream
Tssr5527	transcription start site region 5527	198 bp upstream
Tssr5528	transcription start site region 5528	168 bp upstream
Tssr5529	transcription start site region 5529	117 bp upstream
Tssr156612	transcription start site region 156612	1084 bp downstream
Tssr156613	transcription start site region 156613	985 bp downstream
Tssr156614	transcription start site region 156614	304 bp upstream
Tssr159513	transcription start site region 159513	1134 bp upstream
Tssr159514	transcription start site region 159514	1086 bp upstream
Tssr159515	transcription start site region 159515	1064 bp upstream
Tssr159516	transcription start site region 159516	948 bp upstream
Tssr159517	transcription start site region 159517	218 bp upstream
Tssr159518	transcription start site region 159518	147 bp upstream
Tssr159519	transcription start site region 159519	93 bp upstream
Tssr159520	transcription start site region 159520	48 bp upstream
Tssr159521	transcription start site region 159521	4 bp upstream
Tssr159522	transcription start site region 159522	93 bp downstream
Tssr159523	transcription start site region 159523	115 bp downstream
Tssr159524	transcription start site region 159524	167 bp downstream
Tssr159525	transcription start site region 159525	1018 bp downstream
Tssr159526	transcription start site region 159526	1048 bp downstream