rs580154643 SNP Detail

Summary

• ID
  rs580154643
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG TTTCCACCGC TTCGGTGGGA
  C
  GCTTCCAGGA GCGCCTTCCC AAGGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	JF1/MsJ
ss914446708	MGP_WTSI_1_9546223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	JF1/MsJ
rs580154643					SNP	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914446708	MGP_WTSI_1_9546223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616448 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1725 bp upstream
Cpgi23	CpG island 23	within coordinates
Rr395961	regulatory region 395961	827 bp downstream
Rr407596	regulatory region 407596	1025 bp distal
Rr407597	regulatory region 407597	805 bp distal
Rr407598	regulatory region 407598	869 bp distal
Rr407599	regulatory region 407599	641 bp distal
Rr407600	regulatory region 407600	within coordinates
Rr407601	regulatory region 407601	63 bp distal
Rr407602	regulatory region 407602	1298 bp proximal
Rr407603	regulatory region 407603	1736 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-NonSynonymous
Tssr5894	transcription start site region 5894	835 bp downstream
Tssr5895	transcription start site region 5895	744 bp downstream
Tssr5896	transcription start site region 5896	728 bp downstream
Tssr5897	transcription start site region 5897	235 bp downstream
Tssr5898	transcription start site region 5898	1826 bp upstream
Tssr5899	transcription start site region 5899	1891 bp upstream