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rs580162735 SNP Detail
Summary
  • ID
    rs580162735
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982292 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCTTC CTTGTATGTC AAAATGCTGG
Y
GTGGAAGGTG GTGGAGCCCG TGCTG                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059811 MGP_WTSI_1_150106541 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580162735 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059811 MGP_WTSI_1_150106541 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982292 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1892 bp distal
Rr24983 regulatory region 24983 1996 bp distal
Tssr9264 transcription start site region 9264 1994 bp downstream
Tssr9265 transcription start site region 9265 1967 bp downstream
Tssr9266 transcription start site region 9266 1878 bp downstream
Tssr9267 transcription start site region 9267 1543 bp downstream
Tssr9268 transcription start site region 9268 1473 bp downstream
Tssr9269 transcription start site region 9269 1136 bp downstream
Tssr9270 transcription start site region 9270 1105 bp downstream
Tssr9271 transcription start site region 9271 1082 bp downstream
Tssr9272 transcription start site region 9272 1051 bp downstream
Tssr9273 transcription start site region 9273 1007 bp downstream
Tssr9274 transcription start site region 9274 987 bp downstream
Tssr9275 transcription start site region 9275 955 bp downstream
Tssr9276 transcription start site region 9276 941 bp downstream
Tssr9277 transcription start site region 9277 885 bp downstream
Tssr9278 transcription start site region 9278 864 bp downstream
Tssr9279 transcription start site region 9279 846 bp downstream
Tssr9280 transcription start site region 9280 746 bp downstream
Tssr9281 transcription start site region 9281 726 bp downstream
Tssr9282 transcription start site region 9282 692 bp downstream
Tssr9283 transcription start site region 9283 677 bp downstream
Tssr9284 transcription start site region 9284 665 bp downstream
Tssr9285 transcription start site region 9285 651 bp downstream
Tssr9286 transcription start site region 9286 572 bp downstream
Tssr9287 transcription start site region 9287 56 bp downstream
Tssr9288 transcription start site region 9288 51 bp upstream
Tssr9289 transcription start site region 9289 68 bp upstream
Tssr9290 transcription start site region 9290 224 bp upstream
Tssr9291 transcription start site region 9291 270 bp upstream
Tssr9292 transcription start site region 9292 389 bp upstream
Tssr9293 transcription start site region 9293 418 bp upstream
Tssr9294 transcription start site region 9294 438 bp upstream
Tssr9295 transcription start site region 9295 454 bp upstream
Tssr9296 transcription start site region 9296 476 bp upstream
Tssr9297 transcription start site region 9297 485 bp upstream
Tssr9298 transcription start site region 9298 511 bp upstream
Tssr9299 transcription start site region 9299 533 bp upstream
Tssr9300 transcription start site region 9300 550 bp upstream
Tssr9301 transcription start site region 9301 684 bp upstream
Tssr9302 transcription start site region 9302 714 bp upstream
Tssr9303 transcription start site region 9303 776 bp upstream
Tssr9304 transcription start site region 9304 800 bp upstream
Tssr9305 transcription start site region 9305 818 bp upstream
Tssr9306 transcription start site region 9306 830 bp upstream
Tssr9307 transcription start site region 9307 834 bp upstream
Tssr9308 transcription start site region 9308 867 bp upstream
Tssr9309 transcription start site region 9309 881 bp upstream
Tssr9310 transcription start site region 9310 912 bp upstream
Tssr9311 transcription start site region 9311 924 bp upstream
Tssr9312 transcription start site region 9312 949 bp upstream
Tssr9313 transcription start site region 9313 969 bp upstream
Tssr9314 transcription start site region 9314 980 bp upstream
Tssr9315 transcription start site region 9315 1074 bp upstream
Tssr9316 transcription start site region 9316 1257 bp upstream
Tssr9317 transcription start site region 9317 1534 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory