rs580178828 SNP Detail

Summary

• ID
  rs580178828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20360856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC ACTAAATGGA AGGATGTTCA
  M
  AATGGTGGAA AGTGGCAGAG AGTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	ZALENDE/EiJ
ss921194158	MGP_WTSI_12_20310855	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	ZALENDE/EiJ
rs580178828					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921194158	MGP_WTSI_12_20310855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20360856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	1217 bp proximal
Gm49692	predicted gene, 49692	1777 bp downstream
Gm49697	predicted gene, 49697	1660 bp upstream
Gm61293	predicted gene, 61293	1362 bp upstream
Rr463625	regulatory region 463625	1225 bp proximal
Tssr112921	transcription start site region 112921	1360 bp upstream