rs580192075 SNP Detail

Summary

• ID
  rs580192075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3091285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA ACAAAACCCA ATTTTAAACA
  R
  TCTATTCTCT TTAAAATCAA TACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss916546892	MGP_WTSI_4_3091285	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs580192075					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916546892	MGP_WTSI_4_3091285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3091285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	165 bp distal
Rr588148	regulatory region 588148	63 bp distal
Tssr36318	transcription start site region 36318	1743 bp downstream
Tssr36319	transcription start site region 36319	1485 bp downstream
Tssr36320	transcription start site region 36320	975 bp downstream
Tssr36321	transcription start site region 36321	857 bp downstream
Tssr36322	transcription start site region 36322	788 bp downstream
Tssr36323	transcription start site region 36323	598 bp downstream
Tssr36324	transcription start site region 36324	483 bp downstream
Tssr40800	transcription start site region 40800	1698 bp upstream
Tssr40801	transcription start site region 40801	1465 bp upstream
Tssr40802	transcription start site region 40802	1051 bp upstream
Tssr40803	transcription start site region 40803	1005 bp upstream