rs580192562 SNP Detail

Summary

• ID
  rs580192562
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30352075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTTTG TGTCTCTGTC
  A
  GTGTGTGTGT GTTTGTGTGA TTGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss921762203	MGP_WTSI_13_30168092	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs580192562					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921762203	MGP_WTSI_13_30168092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30352075 () rs orientation: forward

Symbol	Name	Function Class
Gm40869	predicted gene, 40869	within coordinates
Mboat1	membrane bound O-acyltransferase domain containing 1	within coordinates
Rr278813	regulatory region 278813	836 bp proximal
Rr283042	regulatory region 283042	875 bp distal
Tssr119080	transcription start site region 119080	1721 bp downstream
Tssr119081	transcription start site region 119081	1120 bp downstream
Tssr119082	transcription start site region 119082	1089 bp downstream