rs580210601 SNP Detail

Summary

• ID
  rs580210601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118311016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CCAGGGGCGC GCGCGCGCGC
  R
  CGCGCACACA CACACACACA CATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ST/bJ
ss921111811	MGP_WTSI_11_118420190	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ST/bJ
rs580210601					SNP	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921111811	MGP_WTSI_11_118420190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118311016 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	1104 bp upstream
Cpgi4233	CpG island 4233	715 bp distal
Gm35598	predicted gene, 35598	1940 bp downstream
Gm72450	predicted gene, 72450	316 bp downstream
Rr403174	regulatory region 403174	1014 bp downstream
Rr461045	regulatory region 461045	1178 bp distal
Rr461046	regulatory region 461046	1093 bp distal
Rr461047	regulatory region 461047	422 bp distal
Tssr106139	transcription start site region 106139	939 bp downstream
Tssr112169	transcription start site region 112169	1175 bp upstream
Tssr112170	transcription start site region 112170	1144 bp upstream
Tssr112171	transcription start site region 112171	1059 bp upstream