rs580255452 SNP Detail

Summary

• ID
  rs580255452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CTACACATGT ATACACACAC
  W
  CACACACACA CACACACACA CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss915002207	MGP_WTSI_1_138176284	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs580255452					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915002207	MGP_WTSI_1_138176284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104022 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	576 bp upstream
Rr396335	regulatory region 396335	756 bp downstream
Rr396336	regulatory region 396336	within coordinates
Rr419677	regulatory region 419677	1028 bp distal
Rr419678	regulatory region 419678	488 bp distal
Tssr233	transcription start site region 233	659 bp upstream
Tssr9153	transcription start site region 9153	1826 bp downstream
Tssr9154	transcription start site region 9154	647 bp downstream
Tssr9155	transcription start site region 9155	584 bp downstream
Tssr14018	transcription start site region 14018	1980 bp upstream
Tssr14019	transcription start site region 14019	1945 bp upstream
Tssr14020	transcription start site region 14020	1936 bp upstream
Tssr14021	transcription start site region 14021	1086 bp upstream
Tssr14022	transcription start site region 14022	1030 bp upstream
Tssr14023	transcription start site region 14023	973 bp upstream
Tssr14024	transcription start site region 14024	640 bp upstream
Tssr14025	transcription start site region 14025	624 bp upstream
Tssr14026	transcription start site region 14026	596 bp upstream
Tssr14027	transcription start site region 14027	580 bp upstream
Tssr14028	transcription start site region 14028	544 bp upstream
Tssr14029	transcription start site region 14029	520 bp upstream
Tssr14030	transcription start site region 14030	372 bp upstream
Tssr14031	transcription start site region 14031	348 bp upstream