rs580276415 SNP Detail

Summary

• ID
  rs580276415
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TTGTTATTTT TGTTTTTTTT
  T
  TTTTGTTTTG TTTTGTTTTG TTTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss921217985	MGP_WTSI_12_26444476	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs580276415					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921217985	MGP_WTSI_12_26444476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494475 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	87 bp distal
Rr464137	regulatory region 464137	1899 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	723 bp downstream
Tssr112999	transcription start site region 112999	658 bp downstream
Tssr113000	transcription start site region 113000	557 bp downstream
Tssr113001	transcription start site region 113001	70 bp downstream
Tssr113002	transcription start site region 113002	46 bp downstream
Tssr113003	transcription start site region 113003	9 bp upstream
Tssr113004	transcription start site region 113004	69 bp upstream
Tssr113005	transcription start site region 113005	95 bp upstream
Tssr113006	transcription start site region 113006	458 bp upstream
Tssr113007	transcription start site region 113007	542 bp upstream
Tssr113008	transcription start site region 113008	710 bp upstream
Tssr113009	transcription start site region 113009	728 bp upstream
Tssr113010	transcription start site region 113010	878 bp upstream
Tssr115902	transcription start site region 115902	1606 bp upstream
Tssr115903	transcription start site region 115903	1276 bp upstream
Tssr115904	transcription start site region 115904	1252 bp upstream
Tssr115905	transcription start site region 115905	954 bp upstream
Tssr115906	transcription start site region 115906	834 bp upstream
Tssr115907	transcription start site region 115907	775 bp upstream
Tssr115908	transcription start site region 115908	731 bp upstream
Tssr115909	transcription start site region 115909	647 bp upstream
Tssr115910	transcription start site region 115910	593 bp upstream
Tssr115911	transcription start site region 115911	545 bp upstream
Tssr115912	transcription start site region 115912	531 bp upstream
Tssr115913	transcription start site region 115913	496 bp upstream
Tssr115914	transcription start site region 115914	448 bp upstream
Tssr115915	transcription start site region 115915	405 bp upstream
Tssr115916	transcription start site region 115916	364 bp upstream
Tssr115917	transcription start site region 115917	314 bp upstream
Tssr115918	transcription start site region 115918	299 bp upstream
Tssr115919	transcription start site region 115919	268 bp upstream
Tssr115920	transcription start site region 115920	236 bp upstream
Tssr115921	transcription start site region 115921	57 bp downstream
Tssr115922	transcription start site region 115922	153 bp downstream
Tssr115923	transcription start site region 115923	236 bp downstream
Tssr115924	transcription start site region 115924	307 bp downstream
Tssr115925	transcription start site region 115925	322 bp downstream
Tssr115926	transcription start site region 115926	671 bp downstream
Tssr115927	transcription start site region 115927	715 bp downstream