rs580285316 SNP Detail

Summary

• ID
  rs580285316
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG GTCCGCCAGA GCTACACAGT
  K
  TGGCCTTATC TACAACAAAA CTACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	KK/HlJ	PWK/PhJ	SPRET/EiJ
ss920693847	MGP_WTSI_11_3122708	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	KK/HlJ	PWK/PhJ	SPRET/EiJ
rs580285316					SNP	G	T	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693847	MGP_WTSI_11_3122708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	556 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1113 bp upstream
Rr402381	regulatory region 402381	1483 bp downstream
Rr441449	regulatory region 441449	within coordinates
Rr441450	regulatory region 441450	211 bp proximal
Rr441451	regulatory region 441451	618 bp proximal
Rr441452	regulatory region 441452	777 bp proximal
Rr441453	regulatory region 441453	1324 bp proximal
Rr441454	regulatory region 441454	1716 bp proximal
Rr441455	regulatory region 441455	1939 bp proximal
Tssr100004	transcription start site region 100004	1291 bp upstream
Tssr100005	transcription start site region 100005	1335 bp upstream
Tssr106442	transcription start site region 106442	1197 bp downstream