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rs580298010 SNP Detail
Summary
  • ID
    rs580298010
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr5:137178427 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAGTG GTGGTGACAT CAGCAGTGGT
K
GTGACATCAG CAGTGGTTGT GACTT                                      

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S5/SvEvBrd
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/1J
JF1/MsJ
KK/HlJ
LEWES/EiJ
MA/MyJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
RF/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
ss917727688 MGP_WTSI_5_137149579 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S5/SvEvBrd
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/1J
JF1/MsJ
KK/HlJ
LEWES/EiJ
MA/MyJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
RF/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
rs580298010 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727688 MGP_WTSI_5_137149579 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178427 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 311 bp upstream
Tssr1678 transcription start site region 1678 905 bp downstream
Tssr1679 transcription start site region 1679 1848 bp downstream
Tssr1680 transcription start site region 1680 1868 bp upstream
Tssr1681 transcription start site region 1681 1891 bp downstream
Tssr1682 transcription start site region 1682 1908 bp downstream
Tssr1683 transcription start site region 1683 1997 bp downstream
Tssr49309 transcription start site region 49309 199 bp upstream
Tssr49310 transcription start site region 49310 559 bp upstream
Tssr49311 transcription start site region 49311 573 bp upstream
Tssr49312 transcription start site region 49312 953 bp upstream
Tssr49313 transcription start site region 49313 1201 bp upstream
Tssr49314 transcription start site region 49314 1472 bp upstream
Tssr49315 transcription start site region 49315 1488 bp upstream
Tssr53919 transcription start site region 53919 59 bp downstream
Tssr53920 transcription start site region 53920 75 bp downstream
Tssr53921 transcription start site region 53921 230 bp downstream
Tssr53922 transcription start site region 53922 271 bp downstream
Tssr53923 transcription start site region 53923 312 bp downstream
Tssr53924 transcription start site region 53924 326 bp downstream
Tssr53925 transcription start site region 53925 364 bp downstream
Tssr53926 transcription start site region 53926 395 bp downstream
Tssr53927 transcription start site region 53927 544 bp downstream
Tssr53928 transcription start site region 53928 562 bp downstream
Tssr53929 transcription start site region 53929 599 bp downstream
Tssr53930 transcription start site region 53930 664 bp downstream
Tssr53931 transcription start site region 53931 689 bp downstream
Tssr53932 transcription start site region 53932 705 bp downstream
Tssr53933 transcription start site region 53933 743 bp downstream
Tssr53934 transcription start site region 53934 775 bp downstream
Tssr53935 transcription start site region 53935 826 bp downstream
Tssr53936 transcription start site region 53936 847 bp downstream
Tssr53937 transcription start site region 53937 937 bp downstream
Tssr53938 transcription start site region 53938 973 bp downstream
Tssr53939 transcription start site region 53939 1027 bp downstream
Tssr53940 transcription start site region 53940 1203 bp downstream
Tssr53941 transcription start site region 53941 1243 bp downstream
Tssr53942 transcription start site region 53942 1302 bp downstream
Tssr53943 transcription start site region 53943 1467 bp downstream
Tssr53944 transcription start site region 53944 1516 bp downstream
Tssr53945 transcription start site region 53945 1526 bp downstream
Tssr53946 transcription start site region 53946 1547 bp downstream
Tssr53947 transcription start site region 53947 1655 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory