rs580302687 SNP Detail

Summary

• ID
  rs580302687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43483680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GAGGGGAGGG GAGGGGAGGG
  R
  AGGGGAGGGG AAGAAGGGAG AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	WSB/EiJ
ss923149728	MGP_WTSI_16_43663317	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	WSB/EiJ
rs580302687					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923149728	MGP_WTSI_16_43663317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43483680 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	1525 bp downstream
Rr516192	regulatory region 516192	819 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	within coordinates
Tssr138525	transcription start site region 138525	1213 bp upstream
Tssr141140	transcription start site region 141140	86 bp upstream
Tssr141141	transcription start site region 141141	787 bp downstream
Tssr141142	transcription start site region 141142	815 bp downstream
Tssr141143	transcription start site region 141143	828 bp downstream
Tssr141144	transcription start site region 141144	1043 bp downstream
Tssr141145	transcription start site region 141145	1682 bp downstream