rs580303205 SNP Detail

Summary

• ID
  rs580303205
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58779117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGAAGGA AGGAAGGAAG
  A
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	WSB/EiJ
ss924349794	MGP_WTSI_19_58790685	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	WSB/EiJ
rs580303205					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924349794	MGP_WTSI_19_58790685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58779117 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	110 bp downstream
Gm56672	predicted gene, 56672	646 bp upstream
Spmip5	sperm microtubule inner protein 5	within coordinates