rs580309706 SNP Detail

Summary

• ID
  rs580309706
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT CCTCGGTGTC TTGGAGAAAA
  C
  ATTTTCATGT GATGACCGTC AAGAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss923560679	MGP_WTSI_17_39849552	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs580309706					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923560679	MGP_WTSI_17_39849552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160443 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	721 bp distal
Gm26917	predicted gene, 26917	764 bp downstream
Rn18s	18S ribosomal RNA	1351 bp distal
Rn18s-rs5	18s RNA, related sequence 5	1350 bp downstream
Tssr144613	transcription start site region 144613	1960 bp downstream
Tssr144614	transcription start site region 144614	1938 bp downstream
Tssr144615	transcription start site region 144615	1857 bp downstream
Tssr144616	transcription start site region 144616	1767 bp downstream
Tssr144617	transcription start site region 144617	1740 bp downstream
Tssr144618	transcription start site region 144618	1723 bp downstream
Tssr144619	transcription start site region 144619	1680 bp downstream
Tssr144620	transcription start site region 144620	1657 bp downstream
Tssr144621	transcription start site region 144621	1543 bp downstream
Tssr144622	transcription start site region 144622	1527 bp downstream
Tssr144623	transcription start site region 144623	1497 bp downstream
Tssr144624	transcription start site region 144624	1362 bp downstream
Tssr144625	transcription start site region 144625	1345 bp downstream
Tssr144626	transcription start site region 144626	1316 bp downstream
Tssr144627	transcription start site region 144627	1284 bp downstream
Tssr144628	transcription start site region 144628	1125 bp downstream
Tssr144629	transcription start site region 144629	1051 bp downstream
Tssr144630	transcription start site region 144630	1042 bp downstream
Tssr144631	transcription start site region 144631	945 bp downstream
Tssr144632	transcription start site region 144632	835 bp downstream
Tssr144633	transcription start site region 144633	788 bp downstream
Tssr148065	transcription start site region 148065	1768 bp upstream
Tssr148066	transcription start site region 148066	1691 bp upstream
Tssr148067	transcription start site region 148067	1591 bp upstream
Tssr148068	transcription start site region 148068	1493 bp upstream
Tssr148069	transcription start site region 148069	1310 bp upstream
Tssr148070	transcription start site region 148070	1246 bp upstream
Tssr148071	transcription start site region 148071	1220 bp upstream
Tssr148072	transcription start site region 148072	892 bp upstream