rs580345030 SNP Detail

Summary

• ID
  rs580345030
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93951440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC AAAAAAAAAA AAAAAAACCC
  T
  TAAAATTTTA GGGTCATTTT TTGGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	SM/J
ss924718741	MGP_WTSI_X_94907834	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	CAST/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	SM/J
rs580345030					SNP	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924718741	MGP_WTSI_X_94907834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93951440 () rs orientation: forward

Symbol	Name	Function Class
Rr8012	regulatory region 8012	349 bp distal
Rr406134	regulatory region 406134	1902 bp downstream
Rr406135	regulatory region 406135	792 bp downstream
Rr406136	regulatory region 406136	126 bp downstream
Rr406137	regulatory region 406137	within coordinates