rs580345336 SNP Detail

Summary

• ID
  rs580345336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:22711665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTTCTCT TCTTTCTCTT
  Y
  CTTTCTTCCT TTTTCTTCTT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923082492	MGP_WTSI_16_22892915	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580345336					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923082492	MGP_WTSI_16_22892915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22711665 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahsg	alpha-2-HS-glycoprotein			Intron
				Noncoding-Transcript-Variant
Gm30505	predicted gene, 30505			within coordinates
Rr513334	regulatory region 513334			1506 bp distal
Rr513335	regulatory region 513335			866 bp distal
Rr513336	regulatory region 513336			1067 bp proximal
Rr513337	regulatory region 513337			1416 bp proximal
Tssr4818	transcription start site region 4818			91 bp downstream
Tssr137555	transcription start site region 137555			1581 bp downstream
Tssr137556	transcription start site region 137556			1520 bp downstream
Tssr137557	transcription start site region 137557			864 bp downstream
Tssr137558	transcription start site region 137558			334 bp downstream
Tssr137559	transcription start site region 137559			138 bp downstream
Tssr137560	transcription start site region 137560			95 bp downstream
Tssr137561	transcription start site region 137561			70 bp downstream
Tssr137562	transcription start site region 137562			249 bp upstream
Tssr137563	transcription start site region 137563			1314 bp upstream
Tssr137564	transcription start site region 137564			1333 bp upstream
Tssr137565	transcription start site region 137565			1398 bp upstream
Tssr137566	transcription start site region 137566			1497 bp upstream
Tssr137567	transcription start site region 137567			1862 bp upstream
Tssr137568	transcription start site region 137568			1881 bp upstream
Tssr137569	transcription start site region 137569			1912 bp upstream
Tssr137570	transcription start site region 137570			1927 bp upstream
Tssr140501	transcription start site region 140501			766 bp upstream
Tssr140502	transcription start site region 140502			620 bp upstream
Tssr140503	transcription start site region 140503			582 bp upstream
Tssr140504	transcription start site region 140504			1435 bp downstream
Tssr140505	transcription start site region 140505			1508 bp downstream
Tssr140506	transcription start site region 140506			1915 bp downstream