rs580361527 SNP Detail

Summary

• ID
  rs580361527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105285709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAT TAACACATCG GGAGGCGGGG
  R
  CGCGGGGGGG GGGGCGGGGG GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss914860962	MGP_WTSI_1_105357984	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs580361527					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914860962	MGP_WTSI_1_105357984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105285709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	963 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1867 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1274 bp upstream
Rr416387	regulatory region 416387	1967 bp distal
Rr416388	regulatory region 416388	1325 bp distal
Rr416389	regulatory region 416389	1936 bp distal
Rr416390	regulatory region 416390	1404 bp distal
Rr416391	regulatory region 416391	1242 bp distal
Rr416392	regulatory region 416392	652 bp distal
Rr416393	regulatory region 416393	1040 bp proximal
Tssr8255	transcription start site region 8255	1216 bp downstream
Tssr8256	transcription start site region 8256	1198 bp downstream
Tssr8257	transcription start site region 8257	1127 bp downstream
Tssr8258	transcription start site region 8258	895 bp downstream
Tssr13126	transcription start site region 13126	1468 bp upstream
Tssr13127	transcription start site region 13127	1333 bp upstream
Tssr13128	transcription start site region 13128	1270 bp upstream
Tssr13129	transcription start site region 13129	1196 bp upstream
Tssr13130	transcription start site region 13130	1021 bp upstream