rs580362293 SNP Detail

Summary

• ID
  rs580362293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT TTCTTTCTGT CTTTCTTTCT
  K
  TCTTTCCTGT AGAATCCCTC AGGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J
ss920693850	MGP_WTSI_11_3122818	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J
rs580362293					SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693850	MGP_WTSI_11_3122818	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	446 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1003 bp upstream
Rr402381	regulatory region 402381	1593 bp downstream
Rr441449	regulatory region 441449	74 bp distal
Rr441450	regulatory region 441450	101 bp proximal
Rr441451	regulatory region 441451	508 bp proximal
Rr441452	regulatory region 441452	667 bp proximal
Rr441453	regulatory region 441453	1214 bp proximal
Rr441454	regulatory region 441454	1606 bp proximal
Rr441455	regulatory region 441455	1829 bp proximal
Tssr100004	transcription start site region 100004	1181 bp upstream
Tssr100005	transcription start site region 100005	1225 bp upstream
Tssr106442	transcription start site region 106442	1087 bp downstream