rs580362798 SNP Detail

Summary

• ID
  rs580362798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAGGAAGGA AGGAAGGAAG
  R
  AAGGAAAGAA AGAAAGAAAA TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	MOLF/EiJ	PWK/PhJ	ZALENDE/EiJ
ss916435102	MGP_WTSI_3_130695400	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	MOLF/EiJ	PWK/PhJ	ZALENDE/EiJ
rs580362798					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916435102	MGP_WTSI_3_130695400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489049 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	802 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	517 bp downstream
Rr398016	regulatory region 398016	1061 bp downstream
Rr585194	regulatory region 585194	1047 bp distal
Rr585195	regulatory region 585195	1166 bp distal
Rr585196	regulatory region 585196	331 bp distal