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rs580386117 SNP Detail
Summary
  • ID
    rs580386117
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr2:164175171 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTCCT GATGCACCAC TGACCCAGAG
W
ACACAGAAAG ATGGACATAG AGAAT                                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915798481 MGP_WTSI_2_164333251 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580386117 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915798481 MGP_WTSI_2_164333251 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164175171 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Svs5 seminal vesicle secretory protein 5 within coordinates
Tssr744 transcription start site region 744 78 bp upstream
Tssr745 transcription start site region 745 121 bp upstream
Tssr746 transcription start site region 746 132 bp upstream
Tssr747 transcription start site region 747 145 bp downstream
Tssr748 transcription start site region 748 166 bp upstream
Tssr749 transcription start site region 749 198 bp upstream
Tssr750 transcription start site region 750 211 bp upstream
Tssr751 transcription start site region 751 265 bp upstream
Tssr752 transcription start site region 752 334 bp upstream
Tssr753 transcription start site region 753 341 bp upstream
Tssr754 transcription start site region 754 1013 bp upstream
Tssr21562 transcription start site region 21562 515 bp downstream
Tssr21563 transcription start site region 21563 506 bp downstream
Tssr21564 transcription start site region 21564 475 bp downstream
Tssr21565 transcription start site region 21565 462 bp downstream
Tssr21566 transcription start site region 21566 451 bp downstream
Tssr21567 transcription start site region 21567 439 bp downstream
Tssr21568 transcription start site region 21568 430 bp downstream
Tssr21569 transcription start site region 21569 44 bp upstream
Tssr21570 transcription start site region 21570 106 bp upstream
Tssr21571 transcription start site region 21571 137 bp upstream
Tssr21572 transcription start site region 21572 154 bp upstream
Tssr21573 transcription start site region 21573 183 bp upstream
Tssr21574 transcription start site region 21574 247 bp upstream
Tssr21575 transcription start site region 21575 1025 bp upstream
Tssr21576 transcription start site region 21576 1041 bp upstream
Tssr21577 transcription start site region 21577 1060 bp upstream
Tssr27433 transcription start site region 27433 102 bp downstream
Tssr27434 transcription start site region 27434 125 bp downstream
Tssr27435 transcription start site region 27435 153 bp downstream
Tssr27436 transcription start site region 27436 172 bp downstream
Tssr27437 transcription start site region 27437 193 bp downstream
Tssr27438 transcription start site region 27438 223 bp downstream
Tssr27439 transcription start site region 27439 237 bp downstream
Tssr27440 transcription start site region 27440 247 bp downstream
Tssr27441 transcription start site region 27441 302 bp downstream
Tssr27442 transcription start site region 27442 310 bp downstream
Tssr27443 transcription start site region 27443 373 bp downstream
Tssr27444 transcription start site region 27444 382 bp downstream
Tssr27445 transcription start site region 27445 998 bp downstream
Tssr27446 transcription start site region 27446 1042 bp downstream
Tssr27447 transcription start site region 27447 1137 bp downstream
Tssr27448 transcription start site region 27448 1751 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory