rs580418924 SNP Detail

Summary

• ID
  rs580418924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116951995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCT GGGGTCGCCA CGGCCGCGCT
  Y
  GCTGCCGCCG CCCCCCTGCG GGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915652436	MGP_WTSI_2_117121514	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580418924					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915652436	MGP_WTSI_2_117121514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116951995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	within coordinates
Gm74661	predicted gene, 74661	556 bp downstream
Rr367269	regulatory region 367269	649 bp downstream
Rr373730	regulatory region 373730	1203 bp downstream
Rr397194	regulatory region 397194	1296 bp upstream
Rr563062	regulatory region 563062	1027 bp distal
Rr563063	regulatory region 563063	1079 bp distal
Rr563064	regulatory region 563064	within coordinates
Rr563065	regulatory region 563065	135 bp proximal
Spred1	sprouty protein with EVH-1 domain 1, related sequence	within coordinates
Tssr19479	transcription start site region 19479	1073 bp downstream
Tssr19480	transcription start site region 19480	760 bp downstream
Tssr19481	transcription start site region 19481	720 bp downstream
Tssr19482	transcription start site region 19482	659 bp downstream
Tssr19483	transcription start site region 19483	632 bp downstream
Tssr19484	transcription start site region 19484	609 bp downstream
Tssr19485	transcription start site region 19485	581 bp downstream
Tssr19486	transcription start site region 19486	516 bp downstream
Tssr19487	transcription start site region 19487	469 bp downstream
Tssr19488	transcription start site region 19488	365 bp downstream
Tssr19489	transcription start site region 19489	337 bp downstream
Tssr19490	transcription start site region 19490	115 bp downstream
Tssr19491	transcription start site region 19491	41 bp downstream
Tssr19492	transcription start site region 19492	1708 bp upstream
Tssr25740	transcription start site region 25740	1359 bp downstream