rs580427885 SNP Detail

Summary

• ID
  rs580427885
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72539841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG CTGGACTCAA AAAAGCAAGC
  S
  ACACCTGAGG TGTCATCTGT CCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924615129	MGP_WTSI_X_73496235	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580427885					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924615129	MGP_WTSI_X_73496235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72539841 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	302 bp downstream
Rr7747	regulatory region 7747	1104 bp distal
Tssr5634	transcription start site region 5634	1514 bp upstream
Tssr5635	transcription start site region 5635	1171 bp upstream
Tssr161228	transcription start site region 161228	1626 bp downstream
Tssr161229	transcription start site region 161229	1593 bp downstream
Tssr161230	transcription start site region 161230	1569 bp downstream
Tssr161231	transcription start site region 161231	1544 bp downstream
Tssr161232	transcription start site region 161232	1499 bp downstream
Tssr161233	transcription start site region 161233	1425 bp downstream
Tssr161234	transcription start site region 161234	1401 bp downstream
Tssr161235	transcription start site region 161235	1319 bp downstream
Tssr161236	transcription start site region 161236	1272 bp downstream
Tssr161237	transcription start site region 161237	1247 bp downstream
Tssr161238	transcription start site region 161238	1211 bp downstream
Tssr161239	transcription start site region 161239	1160 bp downstream
Tssr161240	transcription start site region 161240	1126 bp downstream
Tssr161241	transcription start site region 161241	1103 bp downstream
Tssr161242	transcription start site region 161242	932 bp downstream
Tssr161243	transcription start site region 161243	903 bp downstream
Tssr161244	transcription start site region 161244	833 bp downstream
Tssr161245	transcription start site region 161245	783 bp downstream
Tssr161246	transcription start site region 161246	640 bp downstream
Tssr161247	transcription start site region 161247	605 bp downstream
Tssr161248	transcription start site region 161248	347 bp downstream
Tssr163547	transcription start site region 163547	1558 bp upstream
Tssr163548	transcription start site region 163548	1486 bp upstream
Tssr163549	transcription start site region 163549	1420 bp upstream
Tssr163550	transcription start site region 163550	1357 bp upstream
Tssr163551	transcription start site region 163551	1199 bp upstream
Tssr163552	transcription start site region 163552	1137 bp upstream
Tssr163553	transcription start site region 163553	1064 bp upstream
Tssr163554	transcription start site region 163554	1039 bp upstream
Tssr163555	transcription start site region 163555	941 bp upstream