rs580441109 SNP Detail

Summary

• ID
  rs580441109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127126593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCG TGCCGCTTTC TGATTGGTAG
  R
  CTCCTGGACC CTGCCCCCCC CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920680442	MGP_WTSI_10_127290724	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580441109					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920680442	MGP_WTSI_10_127290724	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127126593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	1141 bp distal
Cpgi2350	CpG island 2350	within coordinates
Ddit3	DNA-damage inducible transcript 3	69 bp upstream
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	885 bp downstream
Gm66222	predicted gene, 66222	211 bp downstream
Mbd6	methyl-CpG binding domain protein 6	1706 bp upstream
Rr369092	regulatory region 369092	within coordinates
Rr402323	regulatory region 402323	1337 bp downstream
Rr402324	regulatory region 402324	608 bp upstream
Rr440864	regulatory region 440864	1845 bp distal
Rr440865	regulatory region 440865	1558 bp distal
Rr440866	regulatory region 440866	705 bp distal
Rr440867	regulatory region 440867	within coordinates
Rr440868	regulatory region 440868	84 bp distal
Rr440869	regulatory region 440869	614 bp proximal
Tssr3392	transcription start site region 3392	1773 bp downstream
Tssr96179	transcription start site region 96179	710 bp downstream
Tssr96180	transcription start site region 96180	62 bp upstream
Tssr99758	transcription start site region 99758	1950 bp upstream
Tssr99759	transcription start site region 99759	1878 bp upstream
Tssr99760	transcription start site region 99760	1806 bp upstream
Tssr99761	transcription start site region 99761	1727 bp upstream
Tssr99762	transcription start site region 99762	1689 bp upstream
Tssr99763	transcription start site region 99763	1657 bp upstream
Tssr99764	transcription start site region 99764	364 bp upstream