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rs580443828 SNP Detail
Summary
  • ID
    rs580443828
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr1:149980197 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCTAT CACTGGCACC CCCTGCTGCC
C
GACACCTTCA ACATTGAAGA CCAGG                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059791 MGP_WTSI_1_150104446 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580443828 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059791 MGP_WTSI_1_150104446 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149980197 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr242 transcription start site region 242 1641 bp downstream
Tssr9233 transcription start site region 9233 1801 bp downstream
Tssr9234 transcription start site region 9234 1772 bp downstream
Tssr9235 transcription start site region 9235 1741 bp downstream
Tssr9236 transcription start site region 9236 1716 bp downstream
Tssr9237 transcription start site region 9237 1684 bp downstream
Tssr9238 transcription start site region 9238 1653 bp downstream
Tssr9239 transcription start site region 9239 1619 bp downstream
Tssr9240 transcription start site region 9240 1605 bp downstream
Tssr9241 transcription start site region 9241 1575 bp downstream
Tssr9242 transcription start site region 9242 1559 bp downstream
Tssr9243 transcription start site region 9243 1432 bp downstream
Tssr9244 transcription start site region 9244 1381 bp downstream
Tssr9245 transcription start site region 9245 1345 bp downstream
Tssr9246 transcription start site region 9246 1326 bp downstream
Tssr9247 transcription start site region 9247 1191 bp downstream
Tssr9248 transcription start site region 9248 758 bp downstream
Tssr9249 transcription start site region 9249 744 bp downstream
Tssr9250 transcription start site region 9250 543 bp downstream
Tssr9251 transcription start site region 9251 491 bp downstream
Tssr9252 transcription start site region 9252 456 bp downstream
Tssr9253 transcription start site region 9253 431 bp downstream
Tssr9254 transcription start site region 9254 415 bp downstream
Tssr9255 transcription start site region 9255 364 bp downstream
Tssr9256 transcription start site region 9256 159 bp downstream
Tssr9257 transcription start site region 9257 125 bp downstream
Tssr9258 transcription start site region 9258 109 bp downstream
Tssr9259 transcription start site region 9259 52 bp downstream
Tssr9260 transcription start site region 9260 within coordinates
Tssr9261 transcription start site region 9261 13 bp upstream
Tssr9262 transcription start site region 9262 21 bp upstream
Tssr9263 transcription start site region 9263 43 bp upstream
Tssr9264 transcription start site region 9264 88 bp upstream
Tssr9265 transcription start site region 9265 119 bp upstream
Tssr9266 transcription start site region 9266 208 bp upstream
Tssr9267 transcription start site region 9267 499 bp upstream
Tssr9268 transcription start site region 9268 555 bp upstream
Tssr9269 transcription start site region 9269 938 bp upstream
Tssr9270 transcription start site region 9270 978 bp upstream
Tssr9271 transcription start site region 9271 1002 bp upstream
Tssr9272 transcription start site region 9272 1032 bp upstream
Tssr9273 transcription start site region 9273 1084 bp upstream
Tssr9274 transcription start site region 9274 1102 bp upstream
Tssr9275 transcription start site region 9275 1129 bp upstream
Tssr9276 transcription start site region 9276 1144 bp upstream
Tssr9277 transcription start site region 9277 1194 bp upstream
Tssr9278 transcription start site region 9278 1215 bp upstream
Tssr9279 transcription start site region 9279 1236 bp upstream
Tssr9280 transcription start site region 9280 1253 bp upstream
Tssr9281 transcription start site region 9281 1359 bp upstream
Tssr9282 transcription start site region 9282 1394 bp upstream
Tssr9283 transcription start site region 9283 1408 bp upstream
Tssr9284 transcription start site region 9284 1423 bp upstream
Tssr9285 transcription start site region 9285 1433 bp upstream
Tssr9286 transcription start site region 9286 1517 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory