rs580463796 SNP Detail

Summary

• ID
  rs580463796
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44055619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GAGGGAGGGA GGGAGGGAGG
  G
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SM/J
ss919803358	MGP_WTSI_9_44144322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J	SM/J
rs580463796					SNP	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919803358	MGP_WTSI_9_44144322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44055619 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Mcam	melanoma cell adhesion molecule	1595 bp downstream
Rr677565	regulatory region 677565	16 bp distal
Rr677566	regulatory region 677566	126 bp proximal
Rr677567	regulatory region 677567	219 bp proximal
Tssr89112	transcription start site region 89112	205 bp downstream
Tssr89113	transcription start site region 89113	391 bp downstream