rs580465554 SNP Detail

Summary

• ID
  rs580465554
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG GCACTTCCTG TATCTCACAA
  A
  GTACAACCTC CCGGGGATTG ACCGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	C57BL/6J	C57L/J
ss918503656	MGP_WTSI_7_7278356	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	C57BL/6J	C57L/J
rs580465554					SNP	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918503656	MGP_WTSI_7_7278356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	67 bp upstream
Tssr64464	transcription start site region 64464	356 bp downstream
Tssr70610	transcription start site region 70610	311 bp upstream
Tssr70611	transcription start site region 70611	270 bp upstream