rs580494753 SNP Detail

Summary

• ID
  rs580494753
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180550088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGAGGGAGGG AGGGAGGGAG
  G
  GAGGGAGGGA GGGAGGGAGG GAGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
ss915160744	MGP_WTSI_1_180722523	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
rs580494753					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915160744	MGP_WTSI_1_180722523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180550088 () rs orientation: forward

Symbol	Name	Function Class
Gm8101	predicted gene 8101	432 bp downstream
Gm70653	predicted gene, 70653	919 bp downstream
Rr424550	regulatory region 424550	1780 bp distal
Rr424551	regulatory region 424551	1980 bp distal
Rr424552	regulatory region 424552	within coordinates