rs580556351 SNP Detail

Summary

• ID
  rs580556351
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100740867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG ACACGGGCGC CGGAGAAAGC
  T
  GAGGGGGGGC GGGACACGGG CGCCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	RF/J	WSB/EiJ
ss924741372	MGP_WTSI_X_101697261	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	RF/J	WSB/EiJ
rs580556351					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924741372	MGP_WTSI_X_101697261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100740867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22873	CpG island 22873	within coordinates
Gcna	germ cell nuclear acidic protein	within coordinates
Gm50476	predicted gene, 50476	within coordinates
Rr692857	regulatory region 692857	1206 bp proximal
Tssr161700	transcription start site region 161700	1420 bp downstream