rs580608698 SNP Detail

Summary

• ID
  rs580608698
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT ATATATATAT ATATATATAT
  W
  CATTCCCATG ACAAAGTTTA CTGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss920636973	MGP_WTSI_10_117276625	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs580608698					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920636973	MGP_WTSI_10_117276625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112530 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	916 bp downstream
Rr439488	regulatory region 439488	727 bp distal
Tssr95904	transcription start site region 95904	704 bp upstream
Tssr95905	transcription start site region 95905	760 bp upstream
Tssr95906	transcription start site region 95906	822 bp upstream
Tssr95907	transcription start site region 95907	839 bp upstream
Tssr95908	transcription start site region 95908	1015 bp upstream
Tssr95909	transcription start site region 95909	1091 bp upstream
Tssr95910	transcription start site region 95910	1226 bp upstream
Tssr95911	transcription start site region 95911	1356 bp upstream
Tssr95912	transcription start site region 95912	1451 bp upstream
Tssr95913	transcription start site region 95913	1511 bp upstream
Tssr99410	transcription start site region 99410	805 bp downstream
Tssr99411	transcription start site region 99411	857 bp downstream
Tssr99412	transcription start site region 99412	978 bp downstream
Tssr99413	transcription start site region 99413	1039 bp downstream
Tssr99414	transcription start site region 99414	1128 bp downstream
Tssr99415	transcription start site region 99415	1211 bp downstream
Tssr99416	transcription start site region 99416	1261 bp downstream
Tssr99417	transcription start site region 99417	1373 bp downstream
Tssr99418	transcription start site region 99418	1387 bp downstream
Tssr99419	transcription start site region 99419	1402 bp downstream
Tssr99420	transcription start site region 99420	1474 bp downstream
Tssr99421	transcription start site region 99421	1548 bp downstream