rs580620939 SNP Detail

Summary

• ID
  rs580620939
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78141028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GAGGATGGGG GTGAGGATGG
  G
  GGTGAGGATG GAGGTGAGGA TGGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	QSi3/Ianm
ss922915385	MGP_WTSI_15_78256828	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	QSi3/Ianm
rs580620939					SNP	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922915385	MGP_WTSI_15_78256828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78141028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	1810 bp distal
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	1843 bp distal
Rr505235	regulatory region 505235	within coordinates
Rr505236	regulatory region 505236	793 bp proximal
Tssr131906	transcription start site region 131906	1934 bp downstream