rs580636661 SNP Detail

Summary

• ID
  rs580636661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135144856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG TGGTGGCGAG GTGGCGGGCG
  R
  GCGAGCGGGC GGGCGCGCGC ACGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss916456221	MGP_WTSI_3_135439095	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs580636661					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916456221	MGP_WTSI_3_135439095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135144856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			430 bp upstream
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			795 bp downstream
Rr367563	regulatory region 367563			651 bp downstream
Rr398041	regulatory region 398041			1080 bp upstream
Rr585708	regulatory region 585708			1055 bp distal
Rr585709	regulatory region 585709			851 bp distal
Rr585710	regulatory region 585710			520 bp distal
Rr585711	regulatory region 585711			within coordinates
Rr585712	regulatory region 585712			127 bp proximal
Rr585713	regulatory region 585713			272 bp proximal
Rr585714	regulatory region 585714			1773 bp proximal
Tssr1058	transcription start site region 1058			1167 bp downstream
Tssr31809	transcription start site region 31809			969 bp downstream
Tssr31810	transcription start site region 31810			942 bp downstream
Tssr31811	transcription start site region 31811			792 bp downstream
Tssr31812	transcription start site region 31812			705 bp downstream
Tssr31813	transcription start site region 31813			643 bp downstream
Tssr31814	transcription start site region 31814			610 bp downstream
Tssr31815	transcription start site region 31815			555 bp downstream
Tssr31816	transcription start site region 31816			511 bp downstream
Tssr31817	transcription start site region 31817			315 bp downstream
Tssr31818	transcription start site region 31818			42 bp downstream
Tssr31819	transcription start site region 31819			32 bp downstream
Tssr31820	transcription start site region 31820			within coordinates
Tssr31821	transcription start site region 31821			6 bp upstream
Tssr31822	transcription start site region 31822			289 bp upstream
Tssr31823	transcription start site region 31823			347 bp upstream
Tssr31824	transcription start site region 31824			375 bp upstream
Tssr35782	transcription start site region 35782			1089 bp upstream
Tssr35783	transcription start site region 35783			457 bp upstream
Tssr35784	transcription start site region 35784			390 bp upstream
Tssr35785	transcription start site region 35785			1276 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant