rs580651324 SNP Detail

Summary

• ID
  rs580651324
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44465475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCG GGGGTGGAGG GGTGGGGGGG
  K
  GGGGGAATAA GACAATGCGC ATGCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss918713829	MGP_WTSI_7_44816051	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs580651324					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918713829	MGP_WTSI_7_44816051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44465475 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	319 bp upstream
Nup62	nucleoporin 62	37 bp upstream
Rr400297	regulatory region 400297	within coordinates
Tssr66426	transcription start site region 66426	111 bp downstream
Tssr66427	transcription start site region 66427	239 bp upstream
Tssr66428	transcription start site region 66428	272 bp upstream
Tssr66429	transcription start site region 66429	313 bp upstream
Tssr66430	transcription start site region 66430	335 bp upstream
Tssr72230	transcription start site region 72230	394 bp upstream
Tssr72231	transcription start site region 72231	369 bp upstream
Tssr72232	transcription start site region 72232	125 bp upstream
Tssr72233	transcription start site region 72233	535 bp downstream
Tssr72234	transcription start site region 72234	903 bp downstream