rs580656963 SNP Detail

Summary

• ID
  rs580656963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156353033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GGGGAAGTCC ACCCTCTCCT
  Y
  GATGCAGCTT GCGCCTGGTT GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss915080017	MGP_WTSI_1_156525463	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs580656963					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915080017	MGP_WTSI_1_156525463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156353033 () rs orientation: forward

Symbol	Name	Function Class
Csnk2a1-ps3	casein kinase 2, alpha 1 polypeptide, pseudogene 3	within coordinates
Rr421190	regulatory region 421190	1326 bp distal
Tssr9569	transcription start site region 9569	1356 bp downstream